NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0103959_1136715

Scaffold Ga0103959_1136715


Overview

Basic Information
Taxon OID3300007214 Open in IMG/M
Scaffold IDGa0103959_1136715 Open in IMG/M
Source Dataset NameCombined Assembly of cyanobacterial bloom in Punggol water reservoir, Singapore (Diel cycle-Surface layer) 9 sequencing projects
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSingapore Centre on Environmental Life Sciences Engineering (SCELSE), The Singapore Centre on Environmental Life Sciences Engineering
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1360
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Cyanobacterial Bloom In Punggol Reservoir, Singapore (Diel Cycle)

Source Dataset Sampling Location
Location NameSingapore
CoordinatesLat. (o)1.409238Long. (o)103.907928Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000671Metagenome / Metatranscriptome945Y
F002060Metagenome / Metatranscriptome597Y
F011938Metagenome / Metatranscriptome285Y
F013891Metagenome / Metatranscriptome267Y

Sequences

Protein IDFamilyRBSSequence
Ga0103959_11367152F002060AGGMDYTAIVIALFAAILSGFSTAVIAALRDNKKEKIRKQEREQDHLKLEIKDLKIELYRLEKEYYNAIQELIGVKSELENALVQLNIIELRDVDSEY*
Ga0103959_11367153F000671GAGGMEKILCYSCNKTKNKLDVKKSSLLPINLLMCETCISSKLEPRWVIILAGRSNGAEFVKEYIQKRRYVGTEVSASELLI*
Ga0103959_11367154F011938GGAGGVKKYYEVIYVVYIHSESCYGTVEKMGAYASLVKFNIGGKEYEELLENEDFTIVDEIVHEHIEDSN*
Ga0103959_11367155F013891N/AEMAKKVREIAKPNLLMMDIAMYPDFLALRLYEDNFLQFDGSAKERVIDYVTKVKRLIESYGVRCELEGKPSEKVL*
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