NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0075460_10102163

Scaffold Ga0075460_10102163


Overview

Basic Information
Taxon OID3300007234 Open in IMG/M
Scaffold IDGa0075460_10102163 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_15_<0.8_DNA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1030
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.283Long. (o)-75.3633Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015342Metagenome / Metatranscriptome255Y
F025285Metagenome / Metatranscriptome202Y

Sequences

Protein IDFamilyRBSSequence
Ga0075460_101021631F025285N/AMSQVSKLNMVNSKLGATMMGQQTTRYVYDSITAVAGQTTFNFFQTFAGKTDLQSNLTTNKLDSSESMVIKSIFVTGSITAGLSGMSNLNITVGNQVVLKDFNLAFNSTNRGVSFDRLHSGFNDEFNVEIRLLTDIVIPPQVNFKATLELAENTTLIGESLTLGLKGYGTIFS
Ga0075460_101021632F015342N/AMQATTRVIYDQSVTAATQHTLFEGAAGRSFPLTNLGANGNQFQVDEALLVEKIAFFIPDADDDGQNFIQSSNRSYKFDLIIGNKTVIKDVVVEEGGQQAFYTDGNASSRVIDLEGVGILIPPQVEFKVVVKPLVTNSRSQSSQSVGCYLFGTGVLLNFNTSI*

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