Scaffold Ga0099791_10024430

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0099791_10024430

Scaffold Ga0099791_10024430

Overview

Basic Information
Taxon OID	3300007255 Open in IMG/M
Scaffold ID	Ga0099791_10024430 Open in IMG/M
Source Dataset Name	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2618
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location Name	Eel River Critical Zone Observatory, California, USA
Coordinates	Lat. (^o)	39.7291	Long. (^o)	-123.6419	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F072681	Metagenome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0099791_100244303	F072681	N/A	MTQIAHQAGATLHVYHHPGRAARHVVLRDAHNDRGTQFEAAQLEDDGTLRVTGHHIGPGVSEFFGDAITSYDWAYVIAPDRVGTLLTLLGGRAGADVLDLPATCHDQHGGQINDLLRSPQVAATFSNWHS*

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