NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0099793_10002166

Scaffold Ga0099793_10002166


Overview

Basic Information
Taxon OID3300007258 Open in IMG/M
Scaffold IDGa0099793_10002166 Open in IMG/M
Source Dataset NameVadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6501
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (55.56%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameEel River Critical Zone Observatory, California, USA
CoordinatesLat. (o)39.7291Long. (o)-123.6419Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013998Metagenome / Metatranscriptome266N
F014491Metagenome / Metatranscriptome262N
F019978Metagenome226N
F055614Metagenome138Y

Sequences

Protein IDFamilyRBSSequence
Ga0099793_100021664F055614N/AVNSEDDASFEDGFSDQARKKALEMFEHQPVPAAEEFDFGELFARILWEKDWTDKLESVVVKIRNRFRIRDTDTKLSKELKALIPDMREVAKAYDEMTTGYKEFIQTILDAKQSPSSQTRKKIESGKNAKLSNHPARHK*
Ga0099793_100021666F019978GGAGGMSEKKRVPPWERAQLSFTLSERRRLRKVEESERPGKARLLDLEENRKRLAEIRKHFCPDCQRYIRSVQLAKEEQKIGEEQGFCKCARNNPKT*
Ga0099793_100021667F013998GGAMRLKMPLKMHRLLSLLAFVLALIGGVLVVVSALGGLGRPSIVSLAISSLVFLFGLGAILGGWMIYTGIRKLGGIMTLIAGIILFVLTGAAGTSVLLVLAAGVLGLVAAELKPWWAFWR*
Ga0099793_100021668F014491N/AMFLLILASLAMFGTIAYTITLQDITNYAITYITGLLISVTGILLGLSGILPISKSLERMKLQVTLTITTLLWLVATIMIALTNGFTFTPSTPLLRYQFLTGVGLFTILVVFYSTSTIEATRQRLLAAQAAKASEMGKTAG*
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