NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0099793_10009007

Scaffold Ga0099793_10009007


Overview

Basic Information
Taxon OID3300007258 Open in IMG/M
Scaffold IDGa0099793_10009007 Open in IMG/M
Source Dataset NameVadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3800
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (66.67%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameEel River Critical Zone Observatory, California, USA
CoordinatesLat. (o)39.7291Long. (o)-123.6419Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004381Metagenome / Metatranscriptome440Y

Sequences

Protein IDFamilyRBSSequence
Ga0099793_100090072F004381GAGVLVPVTPTWTVDAAAKVQDNVALPEPVTLVGETEHDVLLVVKLTTPAKPLTALTVMADVPAVLALTVTVVGLAAIVKSWTWKVTVTE*
Ga0099793_100090073F004381GAGLVPVVVKVHDKVALPEPVTLVGDTLHDAVVLVARLTTPAKPFRPVTVILEVPAALTLTFTLVGLAAIVKSCTTNVTVTE*
Ga0099793_100090074F004381GGAGVQDSVALPEPVTLVGATEQEVLFVARLTTPANPFRATIVMLEVPAAPTLTLTLVGLAAIVKSWTT*
Ga0099793_100090075F004381GAGVPVTPTWTVDAEVKVHDRVALPDPVTLVGATEQDVLFVVRLTTPANPLMAVTVIVEVPAVLALTVTEVGLAAIVKSWTWNVTVTE*
Ga0099793_100090076F004381GAGLVPVVVKVQDSVELPDPVTLVGDTLHDAVVLVARLTTPAKPFNPVTVMVEVPAALTFTLTLAGLAAIVKSWTTNVTVTE*
Ga0099793_100090077F004381N/AVHDRVALPEPVTLVGATEHEVLLVVRLTTPAKPLRAVIVTVEVPAAPTFTLTLVGLAAIVKS*
Ga0099793_100090078F004381N/AMWNVPAAANVQDNVALPEPVTLVGDTEHEVLFVVRLTTPAKPLIAVTVIADVPADPALTVTDVGLAAIVKSWTWKVTVTE*
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