Scaffold Ga0099794

Basic Information
Taxon OID	3300007265 Open in IMG/M
Scaffold ID	Ga0099794_10002407 Open in IMG/M
Source Dataset Name	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	6894
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (72.73%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

6894

Total Scaffold Genes

11 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

8 (72.73%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location Name	USA: California, Eel River Critical Zone Observatory
Coordinates	Lat. (^o)	39.7291	Long. (^o)	-123.6419	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California, Eel River Critical Zone Observatory

Coordinates

Lat. (^o)

39.7291

Long. (^o)

-123.6419

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F004426	Metagenome	438	N
F014601	Metagenome / Metatranscriptome	261	Y
F025249	Metagenome	202	Y
F028763	Metagenome	190	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0099794_1000240711	F004426	N/A	VDDELRVSTHKSIIKTLGRQYADAAQFFVELVVNSWMWGEATKVEIRIPQSGSTIEYEEWGNGMDLIGLREFLTKGKLTDEGFSPKYKRPIRESYGMGSLAWLTVGKDLELQVHKGRFDRTITLTENLIDKHWDATDQSTWRPLRLIQAPLDHDGLRIRIRSLTKKPDPLDVRRGLLARANVLALRGYGPFEVSVNGEPVKPEELRGSTLLPVNIATEYGKITGEIMIMPISKVRAGISEAGISVQQKHITCLQHQFFGLDQYRTHGLSRIQGWVNADFLRRLPGGNDFEHDSTQWRVFEKAMRGFVKNKVYKFLKQTASRRELRSIRYLNREIAERLRRSLRRNVQILSKVMMNPRVTPKINMVPGKTRKEIVLGERKHRKGKKHSREGTRSVIHLKDQILAFDVAHGGDRGQAYVETDKNGVRTVYVNMDHPMWYVEAGMNPTKLRYCIRQILERSIAEEILPVSPSTPEETFSTLDALYNDALA*
Ga0099794_100024072	F014601	AGGA	MTDQTAGSKTPSPIPRAILAGLIAGIAAGYVSSIFAGTVGFVIGFIAGAIVGSRTVLLMHKAREQDQ*
Ga0099794_100024073	F028763	GAG	MSEPARSKRRIALGAFAIIMGCVSLVGLSSTSYYFGIGVFGGAYGAVMIALGVALIAKKEAVT*
Ga0099794_100024074	F025249	GGA	MSSLGSWFNASASENKDGSSGSGARTPPPSVFGIIVVGLLAGLTVGLLTGPNFTLQGFFLGFAGGALITAGLYFYSSQKSRPPR*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0099794_10002407

Overview

Ecosystem & Geography

Associated Families

Sequences