NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0101452_106234

Scaffold Ga0101452_106234


Overview

Basic Information
Taxon OID3300007280 Open in IMG/M
Scaffold IDGa0101452_106234 Open in IMG/M
Source Dataset NameMarine coastal surface water microbial communities in Port Hacking, Sydney, Australia ? TJ18 time point
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterAustralian Centre for Ecogenomics
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9865
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (69.23%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water → Exploring Phylogenetic Diversity In Port Hacking Ocean In Sydney, Australia

Source Dataset Sampling Location
Location NamePort Hacking, Australia
CoordinatesLat. (o)-34.1192Long. (o)151.2267Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018178Metagenome / Metatranscriptome236Y
F070064Metagenome / Metatranscriptome123Y
F082548Metagenome113Y
F088835Metagenome / Metatranscriptome109N

Sequences

Protein IDFamilyRBSSequence
Ga0101452_10623410F018178GAGMDRILERLSERINEWEGASREAIEAETNFKSYEAATQKAFMDGGASAAKXQKAHMDAGSSAAKAQTETRSTGEWANHYRAVAQASLTAEKLKKQIMLGQLMFDAERTKQANQRRIV*
Ga0101452_10623413F070064GGAGGMGRVKSELMMDGPDDDLVAKPISQTVDNIRHCDLPTNSVERHEYLRTQLKDLINGIKTNTD*
Ga0101452_1062346F088835AGGMMKDIEPSAYIVANQLNFLSGRVVQLLTEYARTKDIKLLEEACNDLATLTARERFIEERFDA*
Ga0101452_1062348F082548GAGGVAQDMVKAMDAAMKQVWDAEPKQERDQGLKRQVFAHVCNNYARRGGYGKTEATD*
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