NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0102689_1064010

Scaffold Ga0102689_1064010


Overview

Basic Information
Taxon OID3300007304 Open in IMG/M
Scaffold IDGa0102689_1064010 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaT (Metagenome Metatranscriptome) (version 2)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1327
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location
Location NameUSA: Ohio, Lake Erie
CoordinatesLat. (o)41.69957Long. (o)-83.2941Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000815Metagenome / Metatranscriptome879Y
F014585Metagenome / Metatranscriptome261N

Sequences

Protein IDFamilyRBSSequence
Ga0102689_10640101F014585GGAMGLDELARLLMTSTMPVNEREMIIDEIKKLTRKTSESLRVPMSNLYSLATTYYNDDPEAESQRNKLLFNGLQHFTTGVTKEQLRKLIKYSQLHKIKLDYHDTLETCILSEKTNGEPAEDLKFGQSKETVLVFQANISPVDSLLDTDITPVEFTLGNPNKNDKKIRKPTQTQ
Ga0102689_10640102F000815N/AMDPFTQQIQRVENNDKVREIVTAFRLIPINDNAARDQLEETLTRILTPAAHKIPETQQKITDFSFTEPDLSYHDIAEKPKYRQMKHGIHYLDEDNTLYYNAAIEASEWEDENVVATAARDEATAAAENDATIQRAYNVALAKQQAINTKIFAQPPRWVLIKRRALNDTRMEDSLLQYIDKKHTQVDWYSTITTLHKTGTKIGYTLDHYQRVLHRFISYFKPEMNQLGQKNGIR*
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