Scaffold Ga0104942_108019

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0104942_108019

Scaffold Ga0104942_108019

Overview

Basic Information
Taxon OID	3300007306 Open in IMG/M
Scaffold ID	Ga0104942_108019 Open in IMG/M
Source Dataset Name	Human buccal mucosa microbial communities from NIH, USA - visit 2, subject 764892411 reassembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1008
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Oral Cavity → Buccal Mucosa → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location
Location Name	USA: Maryland: Natonal Institute of Health
Coordinates	Lat. (^o)	39.0042816	Long. (^o)	-77.1012173	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F081455	Metagenome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104942_1080191	F081455	AGGAG	METTVNKNIMVNEDTTAFDDFITYALTRKLPEGYDIPPVEEIGMQNVEIIDSAEEAIQQPLANTDSSIAVNFSQMINKPEEVKTELVSTPDNGEAKVNVVFPKTEHILGNYVDYDSFNKIKESNTDKVVRAVRLLNYKMADQNAAMKFGQFVSEFNPNGDPNKRLRYELIRHQGREKDLVVRLSTVINGTTKYYADIYPDLNKIDIDHHLISSARK*

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