NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0104967_110916

Scaffold Ga0104967_110916


Overview

Basic Information
Taxon OID3300007317 Open in IMG/M
Scaffold IDGa0104967_110916 Open in IMG/M
Source Dataset NameHuman supragingival plaque microbial communities from NIH, USA - visit 1, subject 763759525 reassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1884
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location
Location NameUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F089056Metagenome109N
F097490Metagenome104N

Sequences

Protein IDFamilyRBSSequence
Ga0104967_1109161F097490N/AEVYNMKIDENKKEVLVEIRNNTENNYYLLSPVVSAMTDHGLHHITSKMIKGQMHHKKLDSIVCSVYIWDDICTEEYYAMRDIVLLPKKSVKTIKYKYNNKEEYKIDKFYTDFPYNSFSNSKEKKKMHFMLKKKLDSSNIIKGYEFYNKDIETRTIKM*
Ga0104967_1109162F089056N/AMNVFCKIILPLLCIISCSKRKEADNTKTLEKNHTFSLWNNDSLGCKHERTIEMGEELYNTFKKSNKNDSILLKEYLGTPNRRFKDKEKIVFMYYINSCCDNGQLLEEYDVSFIAITFTNKNEILFRKGIQ*

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