NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0079242_1276510

Scaffold Ga0079242_1276510


Overview

Basic Information
Taxon OID3300007338 Open in IMG/M
Scaffold IDGa0079242_1276510 Open in IMG/M
Source Dataset NameSeawater microbial communities from Saanich Inlet, British Columbia, Canada - KN S5 c16 DCM_B metaT (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1252
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location
Location NameSouthern Atlantic ocean
CoordinatesLat. (o)-28.2362Long. (o)-38.4949Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001145Metagenome / Metatranscriptome765Y
F001219Metagenome / Metatranscriptome744Y

Sequences

Protein IDFamilyRBSSequence
Ga0079242_12765101F001219N/AFMIFTTTFSINKLFDFDLTFGIELVLFLTLALIVTFKFINPISKEIDDRAEFINYNLRKSTILLTFGYEKLSDCISLLTEEINELNRQTKLTRNYCNSSFEEEVGSIQKENAKILSKLKGDLSIKSAFLFSNISSDLNSLTDKFFEKKFHSTS*
Ga0079242_12765102F001145N/AMDWNTLSFFINEEPLVQLNPNILESNVQNIVILLGILIYANKVSFSVTLENRQKEIIQTIENAQKDVVNASNYYYLAEKGFTQSLFWLQSWKMLYEKDKIDLVNNKYKIVKTGLEDTFATTETLVTNFENKAFLSLQRYMVFITASRILRKFLFLSEAEQSKIIEITISKLGGVK*
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