NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070745_1001502

Scaffold Ga0070745_1001502


Overview

Basic Information
Taxon OID3300007344 Open in IMG/M
Scaffold IDGa0070745_1001502 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12906
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (46.15%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.12Long. (o)-75.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010828Metagenome298N
F015852Metagenome / Metatranscriptome251Y
F024767Metagenome / Metatranscriptome204Y

Sequences

Protein IDFamilyRBSSequence
Ga0070745_10015021F015852GGAGGMDWRGHLITVILAFLLGVLVAWQGCNSEPKTITKVVEKPVPTIEYVERWRTDTVRFVSKQLVTRTDTIYSEKVVTRLDTMLLVDTLKIVETWLSEVANYDTTVNDVRLTWSNYQNRTENLKVELRKKPLSWALGVHGLVGLQSDFVESYTPLFAIGLQGTVKRTYFSVNYGYNGQHFVGVGIGRNIINR*
Ga0070745_100150221F010828N/AVKQQAAIDLLADEELHELADKLCNCPDDLIQEVAMVLLEMTEEKWNQINEGGYLRFYVVRTMMTMATSPRSSFSKLYDLHNHKKVDHEREDYDWEKEEDISLIETLMQELHWYDREVLKLWLEEGSYRKVAKKVGIPYKSIGNTVKKTIETLRANYYGIHLERIIRERVKLPLD*
Ga0070745_10015025F024767GGAMNHLEFQNRLLLDKTIPAFVRLVASKALSDLRTAEVDAGTIRVESFVFWQLVRWSGAEPIKSGLYTFIRIYDDHSNAVDIQCLNS*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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