Scaffold Ga0070752

Basic Information
Taxon OID	3300007345 Open in IMG/M
Scaffold ID	Ga0070752_1023986 Open in IMG/M
Source Dataset Name	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_30
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_30

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3051
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Scaffold Components

Scaffold Length (bps)

3051

Total Scaffold Genes

5 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Novel Protein Genes

2 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Delaware Bay
Coordinates	Lat. (^o)	39.130153	Long. (^o)	-75.249887	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Delaware Bay

Coordinates

Lat. (^o)

39.130153

Long. (^o)

-75.249887

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F064622	Metagenome	128	Y
F084834	Metagenome	112	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0070752_10239861	F064622	GGGGG	MAGFWETYAKLSSPPMYDLSGADPEALKGMGRTMLDSATIVGLGGEIEAGMRAPFSDKTFQEIDSEINKEQAAFKEKYPAEYTASSGLGMLPTIAVGAPAAVTKIIGTGLAKNVGASTALGGLGGFISGSGEGESTEERVQSGKEEAPIFAVGSGVVTAAMMGAIKATPYIGKF
Ga0070752_10239863	F084834	GGAGG	MANPVKGAISQLGERVIDTSKGFFEAIRDAFGRESAGNVQELQRQIRIMPSVPEPTVDNAPLMAVHNTSLEGILAANEIGGIPSPSIGISDPANLQKFGEISLIMDPNKLNPRMNIYPTDAYTGRQPKSKIKIKNTKQFKERLKADINFGHIADDTARYLSSGALEDSDLDLRMVNAAIDFDLVDPKDFDSFGELFGEASRALRGDGRTARLVDNKELLSAYDGISEYADVGRVLPPKDPYYSDGSPRPDRPATLSTSLKDMREGTYGPMYLPASEYGSQNYAGALRAATSRPFQSIDEVKDSRGQIFVDERDNPDFRTNPLEDLFSKFHEVKYSLIDDLTNKFKKTEIRTRRSRNEDGEFVVTQEPITRMMGVDTANELLLAIARNDADISRTAAVSEGFVSMDDIPSLRDAINRVGETMQNAPTKYFEAKPNYAMSLSDFDTALVPRELTENEEVMRIFRENNLPVATYTDFGPNKDEYREGVMRQMKENLFSVPLAGTVGYGALQSVGEDDGESGS*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0070752_1023986

Overview

Ecosystem & Geography

Associated Families

Sequences