NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070753_1085852

Scaffold Ga0070753_1085852


Overview

Basic Information
Taxon OID3300007346 Open in IMG/M
Scaffold IDGa0070753_1085852 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_31
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1243
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.124826Long. (o)-75.260873Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017163Metagenome / Metatranscriptome242Y
F094104Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0070753_10858521F094104N/AEFMERAKDRMIDVTPTENPTESEQIPITDCNGEAVK*
Ga0070753_10858523F017163AGGAGMETITLELPDHWATALFYDDTSGFEYEDDTQFQAFCDWAVKNYGTSEPVEVDNQGHFMTYHDAKQFGVLACNVHRYTFIVNNGNPKTSAMTTLAHTMK*

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