NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0104751_1046867

Scaffold Ga0104751_1046867


Overview

Basic Information
Taxon OID3300007351 Open in IMG/M
Scaffold IDGa0104751_1046867 Open in IMG/M
Source Dataset NameCombined Assembly of Gp0115775, Gp0115815
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterNational Aeronautics and Space Administration (NASA)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2135
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Aquifer → Unclassified → Deep Subsurface Aquifer → Sanford Underground Research Facility - Deep Subsurface Aquifer Microbial Community From Lead, South Dakota

Source Dataset Sampling Location
Location NameLead, South Dakota, USA
CoordinatesLat. (o)44.03416667Long. (o)-103.76583333Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008256Metagenome336Y

Sequences

Protein IDFamilyRBSSequence
Ga0104751_10468672F008256N/AMAMSENTDNTTEDNVVYGFSPDRSRWSNYAMDFDDTKYYYDTKSIVKRHNYVKVWIKFGEPVNEKTSERIYKEATALKEINCGARLIKSLEWNYISMKDEYKTYASSTRWENIEPETVDDALLEAVCARVGSRR*
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