NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0104763_104175

Scaffold Ga0104763_104175


Overview

Basic Information
Taxon OID3300007356 Open in IMG/M
Scaffold IDGa0104763_104175 Open in IMG/M
Source Dataset NameHuman stool microbial communities from NIH, USA - visit 1, subject 159611913 reassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4207
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location
Location NameUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F073573Metagenome120N
F101192Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0104763_1041753F073573AGGAGGMPTIVSFYQRFPNEAPPLNLSAFDRTGYTYAENFRRNERYYEAEQCEVTSDDGSVVLSLDVRIRPRGGEIEALPRVMLSVYSEGMLFQVRRMELRMGDTTYAILPDNVQQYTMRGDTDGGFLETMAIPLGKVGMKMLLEASDAAEARWVIQGARTAQTLPLPAAQKKAIRRFCMDCEESAITYQPAFLWYKDYCTKA*
Ga0104763_1041755F101192AGGAGGMTYWGWLLVDIALLLTALSGTQTSLCQRMRSVPVYRGLTYWEVQQIAKATPTSFTPCGEDTIRRWVSGRYQIALRFNRYDICLGVEEEIDG*
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