NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0104787_101223

Scaffold Ga0104787_101223


Overview

Basic Information
Taxon OID3300007361 Open in IMG/M
Scaffold IDGa0104787_101223 Open in IMG/M
Source Dataset NameHuman stool microbial communities from NIH, USA - visit 2, subject 158337416 reassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)21882
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (83.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location
Location NameUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042910Metagenome157N
F101191Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0104787_10122314F042910AGGAGGLADRLYCALNGTTLRDLDARIHLLDVEELAPAVRTVTASRIGGGLHLLRRQREQLSLRVRFLIEEYDIAARHQLLHLVAAWAEAGGVLTLHEDGKRVLRVVCTQYPTMSTLNWLETLSLVFTAFSCPYWEDAAETSFLMPNTSDAPSKLLAVPGDAPETPLNLLIRNIGDAAITTLTVSAAGKISFQGLTLAPGAAIRIHHDAGVFAAEMVSDESAVSILPYRTPDSADDLLLRPGVMNEIRVEAGSAAFVSGRCKGRYC*
Ga0104787_10122316F101191AGGAGGLLISHHPASAECLQLGEGMLLCGFDLDTALSSRDPLDCMAEAVADDTKRIGTTCGGGIFRAVPREFDPESGSHRLPFAGSIRLIDWRVTLSGTMLDVTPENLVRLLPSDTEMTERVTTLTPKQTRKPLSRLCWIGTTSRGLLVIELRNPLCISGASLTSVPDGAGKLPFTFLAQSDRPGDVNLPVRLYWWKEETHDAA*
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