Scaffold Ga0075458

Basic Information
Taxon OID	3300007363 Open in IMG/M
Scaffold ID	Ga0075458_10001958 Open in IMG/M
Source Dataset Name	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_0.3_<0.8_DNA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0075458_10001958 Open in IMG/M

Source Dataset Name

Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_0.3_<0.8_DNA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	6747
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (75.00%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

6747

Total Scaffold Genes

8 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (75.00%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Delaware Bay
Coordinates	Lat. (^o)	39.283	Long. (^o)	-75.3633	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Delaware Bay

Coordinates

Lat. (^o)

39.283

Long. (^o)

-75.3633

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000258	Metagenome / Metatranscriptome	1443	Y
F035307	Metagenome	172	Y
F056615	Metagenome / Metatranscriptome	137	Y
F060898	Metagenome / Metatranscriptome	132	N
F073184	Metagenome / Metatranscriptome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075458_100019581	F073184	N/A	DVLPLPYKLSELHELYQNDILLLNTLTNVNNWNYNTIISESGFGIRINRANMLDNTVYTANGMVPPPTNDVWNGVFKQGVTYRIQGKFGWEEVPDEVDLACIELMKDYFSKDKVWRNKYMKSIQTFDWKFEYNSGTYSGTGNLYADQLLLPYVINKMVVI*
Ga0075458_100019582	F056615	N/A	MYDLVDSVMPMLLDIYRQFDLQDPNTGAIKKEWQFDRTVACNAKGIISNSSTGRVGDKQVMSNKYSNDQVLQIRTSDKITLREKITNIRDAEGVVIWEELNFPTNTPTVFELLGITPMTDPFGGVIGYNSTVKRSENQIIGQ*
Ga0075458_100019583	F035307	GGA	LDNSSLLVTAASGLQKGMAGTKGTILKDSSVAQISAAIYYHAQVVSKLTTNKAFEKKFQSVIFKQIQDDFGLYVDSQARVNPKSLHHVYEWNKTGNKNSRLFKLNILSTDGLAFKVGSEFLPSKSAVPNKFGKRRHVFINKASVMEAGMPLVIRPKSAERLVFETSTGVVYMPKGASVTVTKPGGGKATGRFRIAYAQFFTGNLVNSAIKKSGFQQLFNSSLTKAMRVPADVRKVKYSFNPNTLNMQAESAIASAFGGAS*
Ga0075458_100019584	F000258	GGAGG	MTVDYKADIMLDLRKYLWSQLKANNMFTATDYYSDNIGQEIVPIIPVQQSPEMNQFLSGKKHIVYDKIGLSYEDNWAICCEQILFTIYSTDISEINEIRNLMTDLFRRMDDSARDANAYSGISKKFKFFSIFVADISPTSPSEEMAGFLSADVILEVKYARFLDSNGRFA*
Ga0075458_100019587	F060898	AGAAG	MPELIQTLKSFKKQKSEDRKFTASLKGIDLDVDEEDEGTQGKTFDDIQRQAMGIKASGDDIVSLQGSFAAQAGFGIGAGLGYTEE*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0075458_10001958

Overview

Ecosystem & Geography

Associated Families

Sequences