Scaffold Ga0104999

Basic Information
Taxon OID	3300007504 Open in IMG/M
Scaffold ID	Ga0104999_1001093 Open in IMG/M
Source Dataset Name	Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 267m, 2.7-0.2um, replicate a
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Georgia Genomics Facility
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 267m, 2.7-0.2um, replicate a

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Georgia Genomics Facility

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	38215
Total Scaffold Genes	33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	20 (60.61%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

38215

Total Scaffold Genes

33 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

20 (60.61%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Water Column → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Water Column → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location
Location Name	Cariaco Basin, Venezuela
Coordinates	Lat. (^o)	10.5	Long. (^o)	-64.66	Alt. (m)	Depth (m)	267
Location on Map

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Source Dataset Sampling Location

Location Name

Cariaco Basin, Venezuela

Coordinates

Lat. (^o)

10.5

Long. (^o)

-64.66

Alt. (m)

Depth (m)

267

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F049214	Metagenome / Metatranscriptome	147	N
F052865	Metagenome / Metatranscriptome	142	Y
F075433	Metagenome / Metatranscriptome	119	N
F083393	Metagenome / Metatranscriptome	113	Y
F086698	Metagenome	110	N
F106168	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104999_100109312	F052865	AGGA	MSFKGYTSFVKKHLDLRGLGIVVLGLGLPSIATWMVNTGVGSRVRSYVDMVPGMTTKYGKAALAVGLTAGVSYLAAHFGAISAAEAMTASMIGFGLVSVGLLQSMSLPVGGNFVDALPASNLGGLAGGASYGYIGNYNEGVGADMLPQPQSQQLFGVRANVF*
Ga0104999_100109316	F049214	GAG	MANLNQGYRSGNAFGRLANVSYESGIAGDDIALKPGYLLRIRDTYALVTGVEAMSVDLFFTDTVNVGITAVSSSIATDFDGTHGEALEQYGLASISAYYDLGTTTVAEADKTGNILAPDYDSGFITFKALEPYAGNLYHLCPTMPLQPKYMVKDSGDWHSLNAYPPYDTSSGGLPVGFKGDGTAANTEHIGSISAKMYLKQPSGVSKHTLDEASDGESARATASETTLEGMSGFIDGEMSPLANPNWAFGMIIEHGEASLPAFRMVNDSDEYVLDGRCRLVGWKYKILELSQEQLATLKAKAGGRLRFMYYNPVTYQSSGFLSDYLAM*
Ga0104999_100109318	F083393	GGAG	MKIVNKAFKWADKHPLVTFAAGTLGIMYLFENYGPVNGLGQAVFKDSGSGMDTFLRKTGHTGTTAPGTGRWDTVMPSPSGPQVRYDAEYHTQPIMMDPALEKMLAERGPRPVVQNASVRHGHDTHVFAGIKNMNMW*
Ga0104999_100109320	F106168	GAGG	MVKLKTKMTRFYKRNKMLSVGIAAVGVWYLMNQRGMAPALPVAPVKKATSAPVARYAYDAYAPVRNEPYYNTSHFFGPADGDPVFYGF*
Ga0104999_100109328	F075433	AGGAG	MTDELIMAKVNAFAQELRTMGVEDFIFAAGSSSGLLAIQYDGDPRGVSFLAMTVLMNAMFESIDNQAGEVYDGGREDYGE*
Ga0104999_100109330	F086698	N/A	VASEDDTINSQIHGTTGSGNILPISAITQETSTSLLFTRQGREDFASATHPRMSVPSHTIAKQLPLLCGLQDVVAQTGFLLTADSSNTVTCMIGGSSVSATDGLPLVAGQSLMLDIVRMSRIYAIAAADPSGGTCNLFWLDM*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0104999_1001093

Overview

Ecosystem & Geography

Associated Families

Sequences