NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0104999_1013267

Scaffold Ga0104999_1013267


Overview

Basic Information
Taxon OID3300007504 Open in IMG/M
Scaffold IDGa0104999_1013267 Open in IMG/M
Source Dataset NameMarine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 267m, 2.7-0.2um, replicate a
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterGeorgia Genomics Facility
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5593
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Water Column → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location
Location NameCariaco Basin, Venezuela
CoordinatesLat. (o)10.5Long. (o)-64.66Alt. (m)Depth (m)267
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016597Metagenome / Metatranscriptome246N
F023963Metagenome / Metatranscriptome208Y

Sequences

Protein IDFamilyRBSSequence
Ga0104999_10132674F023963GGAGMATPSNTHQKSIEFDEVNLFSIDKSVYDWFNTKHATNIQGRKVPVLFGGWERFAQMQDNKQDDNLNRMRDPSGMLILPLISIRRGDVTYNTERFVFQQADGAPRVKISERVAMSNFDADRRVPFDGPHMYSTARRRSDAPVMEIATVPYPDFVNVPYTITFWSSYVRHANYFNDRIWQNAYPQDLTYKGYYFYAFIDSGTNENNEENYTDEERIIRSSFTMTVDGYLLKKNDVNVTRTASKMIMSEGYVEQPAMPTPGHKSIDEILTHERARPPHQYPEPMPPGLGKVNYGSLNNSDFGLNKYNQPQQARVGGGKIDYGAPGARSLDSY*
Ga0104999_10132675F016597GGAMPLDRDTVPHTWEGTGNHGSNPFASSTGDSSYGLFFGPREMELFNDYNTELLGIIAQTGVNYYRIEADSSDPNSIYGESEIKVTRDPVQVMSWVMLDEPETETNSFTVDVRRRIELYMHKDRLTELDLVPRMGDFVGYDNQYFEIQRCGVPNFVYSYPQTKLGVIARCMSVREGVFDPDRDFVNKEYVGDSENPY*

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