Basic Information | |
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Taxon OID | 3300007504 Open in IMG/M |
Scaffold ID | Ga0104999_1013267 Open in IMG/M |
Source Dataset Name | Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 267m, 2.7-0.2um, replicate a |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Georgia Genomics Facility |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 5593 |
Total Scaffold Genes | 8 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (75.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Coastal → Unclassified → Water Column → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela |
Source Dataset Sampling Location | ||||||||
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Location Name | Cariaco Basin, Venezuela | |||||||
Coordinates | Lat. (o) | 10.5 | Long. (o) | -64.66 | Alt. (m) | Depth (m) | 267 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F016597 | Metagenome / Metatranscriptome | 246 | N |
F023963 | Metagenome / Metatranscriptome | 208 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0104999_10132674 | F023963 | GGAG | MATPSNTHQKSIEFDEVNLFSIDKSVYDWFNTKHATNIQGRKVPVLFGGWERFAQMQDNKQDDNLNRMRDPSGMLILPLISIRRGDVTYNTERFVFQQADGAPRVKISERVAMSNFDADRRVPFDGPHMYSTARRRSDAPVMEIATVPYPDFVNVPYTITFWSSYVRHANYFNDRIWQNAYPQDLTYKGYYFYAFIDSGTNENNEENYTDEERIIRSSFTMTVDGYLLKKNDVNVTRTASKMIMSEGYVEQPAMPTPGHKSIDEILTHERARPPHQYPEPMPPGLGKVNYGSLNNSDFGLNKYNQPQQARVGGGKIDYGAPGARSLDSY* |
Ga0104999_10132675 | F016597 | GGA | MPLDRDTVPHTWEGTGNHGSNPFASSTGDSSYGLFFGPREMELFNDYNTELLGIIAQTGVNYYRIEADSSDPNSIYGESEIKVTRDPVQVMSWVMLDEPETETNSFTVDVRRRIELYMHKDRLTELDLVPRMGDFVGYDNQYFEIQRCGVPNFVYSYPQTKLGVIARCMSVREGVFDPDRDFVNKEYVGDSENPY* |
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