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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300007509 Open in IMG/M |
| Scaffold ID | Ga0105012_1000371 Open in IMG/M |
| Source Dataset Name | Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 237m, 2.7-0.2um, replicate b |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | Georgia Genomics Facility |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 58831 |
| Total Scaffold Genes | 97 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 62 (63.92%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Cariaco Basin, Venezuela | |||||||
| Coordinates | Lat. (o) | 10.5 | Long. (o) | -64.66 | Alt. (m) | Depth (m) | 237 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001066 | Metagenome / Metatranscriptome | 788 | Y |
| F001235 | Metagenome / Metatranscriptome | 741 | Y |
| F082802 | Metagenome | 113 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0105012_100037114 | F001066 | N/A | MTDELFKIKPVGVKSKVVMDKRKVVSPYNSAKHFKTANLPAYCNQCVYRSMESGGNDKCPKYEVDAVCAIREDFLKFISEMDTRNPEDIKSMLDLLAKLSLENVLMALTEAKMDGNIPDRNTKSEINTLLNIVKSITDLNSKIVMTEETKLNKKGDIESIFKQIKAQRSE* |
| Ga0105012_10003715 | F082802 | GAGG | MTDENIELFTKVTDVAKLSKKQVAKISARLPEYHRAKSIVGHGTSQTSYSLQTMQMISDSPLSRMKQCLAQIDKKYNALREAYFSVEKLKLEARKLEKNRDHESRLRVREILTQTDSITINMQTTLRQIGMFQDMYDSIKKSNNIPDNWSEKDYEKQEISHMVKSSFRLAIQDLSANGRISHACVEYWEQLGIHPQVAEIRTRKYLTDTQMKINANDYVSIQEMYTFLDEMAEEFKDAHKEALARIGLDGVGSEQFMAEGGTKPT* |
| Ga0105012_100037177 | F001235 | GAG | MATKLNVDTGSDIGNKLWKRHQDDEYTHVDNYKEAICIDCFSRDAAAATIMDICGDCAGKRGREPLLAKITDKMYGLCFFCGKHKFNVEQINARLCRKCHRKVADVTKKYNKKGGMFKCDPFWKSLRKKHGKDWQYSFTDPTKSLRR* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |