NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0105012_1011858

Scaffold Ga0105012_1011858


Overview

Basic Information
Taxon OID3300007509 Open in IMG/M
Scaffold IDGa0105012_1011858 Open in IMG/M
Source Dataset NameMarine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 237m, 2.7-0.2um, replicate b
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterGeorgia Genomics Facility
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6301
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (42.86%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location
Location NameCariaco Basin, Venezuela
CoordinatesLat. (o)10.5Long. (o)-64.66Alt. (m)Depth (m)237
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002667Metagenome539Y
F017252Metagenome242Y

Sequences

Protein IDFamilyRBSSequence
Ga0105012_10118582F017252N/AMPQVIQGYLVNTKPSDTTAESTYVSDVVAAGTTQTIHYPAQYRSFAISAAIKNQDGTNASSFSVNGQPAISLSSGADQNINNQSIVSIEVTAGAAGTCDILAQVTPIYYTTEQRRFTQDRG*
Ga0105012_10118587F002667N/AMEVLSSALIMVAAISAGVSAMFIARGKSSINKHSRQRIKDYESDIKYLGEVKKAEAKDYRDEILRLKGTINRMKQGPNITDADMQNASGIGDVIMQLVPAKYRKAASLLVPQVEEAVKKDPAIIERVYEKIKSANTTSDKQAQPGAQDETANTL*
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