NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0105012_1035924

Scaffold Ga0105012_1035924


Overview

Basic Information
Taxon OID3300007509 Open in IMG/M
Scaffold IDGa0105012_1035924 Open in IMG/M
Source Dataset NameMarine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 237m, 2.7-0.2um, replicate b
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterGeorgia Genomics Facility
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2651
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location
Location NameCariaco Basin, Venezuela
CoordinatesLat. (o)10.5Long. (o)-64.66Alt. (m)Depth (m)237
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012401Metagenome / Metatranscriptome281Y
F012463Metagenome280Y
F014127Metagenome265Y

Sequences

Protein IDFamilyRBSSequence
Ga0105012_10359241F014127N/AMEEGTTMLERINNVKGRILIAGDESSWDFGFMESLEEQLNKRGSLSPRQEEVLQQVEGRWSNEALSSRANWEQDWGTDLEAKFWIALQYYHKTGYYGNIVYKYLTTAGDRCPGTPSEKEYNKLVLNKYAAGVIRNVQAESKFAVGGTAVFRTGARTHKGKACVILKHGNCEHVTSHAKGAKPIQVLPIGAAAPIWTEERWLKKAKKKK*
Ga0105012_10359243F012401AGGAGMIDGILSLEKAALEKLTEDRIASGSLGPEVEDILSEAGIYWDTLNEEYFSIDNFQRETFERLVKEYVSQDYA*
Ga0105012_10359246F012463GGTGGMKIGDIVKLVAEPQVDWMFNYLEETFQVLDFPTETGVELKMIGSVPDWIWIIGKDNLKVADEEG*
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