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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300007509 Open in IMG/M |
| Scaffold ID | Ga0105012_1056665 Open in IMG/M |
| Source Dataset Name | Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 237m, 2.7-0.2um, replicate b |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | Georgia Genomics Facility |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 1851 |
| Total Scaffold Genes | 5 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Cariaco Basin, Venezuela | |||||||
| Coordinates | Lat. (o) | 10.5 | Long. (o) | -64.66 | Alt. (m) | Depth (m) | 237 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001594 | Metagenome / Metatranscriptome | 666 | Y |
| F008755 | Metagenome / Metatranscriptome | 328 | Y |
| F009404 | Metagenome / Metatranscriptome | 318 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0105012_10566653 | F009404 | AGGAG | MSHDEPETIQPKGEPLVKHCPVCGVEFDETVLTNRWLKCDSCETIFQVRVKTGE* |
| Ga0105012_10566654 | F008755 | GGAG | MNKSRVARDLWRKVFNDNLIDLKDSDARKQVVREFLNDPVNKKSGWKAKDARFFRLGFNKVAKENNFNVMNVGVTPTPSRSKTSKGSMNINVKSKQKNPSPLTTEPTSSIKPPTEQEKKFGALPQTPQLENQQAQATYYSAQAVGQIFETVFNIVFTRLGAEGLTQNERIALGEAWTPIFNEYLTGENSKWIMPAVVTMPIILTRVVQVQKIKKEKELAERYGLDEVPKEPQPKKKSAWENMSHGEKTNKG* |
| Ga0105012_10566655 | F001594 | GGAG | MEKKLTKDEYLESLDPDNLNLEKKDLINFCYKCIDEWKNNKVANFKYIVAMELMIGAVRITPEEVMKTVWKKILVWFWDLQYKNALAENDGMLRRLREIGSS* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |