NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0105016_1077186

Scaffold Ga0105016_1077186


Overview

Basic Information
Taxon OID3300007512 Open in IMG/M
Scaffold IDGa0105016_1077186 Open in IMG/M
Source Dataset NameMarine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 247m, 250-2.7um, replicate b
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBigelow Laboratory Single Cell Genomics Center (SCGC)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2095
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location
Location NameCariaco Basin, Venezuela
CoordinatesLat. (o)10.5Long. (o)-64.66Alt. (m)Depth (m)247
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007241Metagenome355Y

Sequences

Protein IDFamilyRBSSequence
Ga0105016_10771862F007241N/AMLNKEIFWTTLVSPNNLTDVSTINGIVKTQNKLIIAVNDIERATSPLAKEVNKFDVTPPGAAAIIITPIANSGDKDHIFTRIKAMIGSKIICDKEPTKKSRGCFITLKKSALVKPRPSTNIIKARASGKITSVTIFICDIIKIL*
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