Scaffold Ga0105019_1000045

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0105019_1000045

Scaffold Ga0105019_1000045

Overview

Basic Information
Taxon OID	3300007513 Open in IMG/M
Scaffold ID	Ga0105019_1000045 Open in IMG/M
Source Dataset Name	Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 237m, 250-2.7um, replicate b
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Georgia Genomics Facility
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	189190
Total Scaffold Genes	220 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	171 (77.73%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	(Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location
Location Name	Cariaco Basin, Venezuela
Coordinates	Lat. (^o)	10.5	Long. (^o)	-64.66	Alt. (m)		Depth (m)	237
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F045052	Metagenome	153	Y
F045684	Metagenome	152	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105019_100004522	F045684	AGAAGG	VDFNKITRKFLMGEWKQSVSILSRTRAIKEALESLKPRTIKERQRIELALENLNHVRRGYRKLEEQNNFLTEENKNLQERLQVLEENKEE*
Ga0105019_100004583	F045052	GGA	MLNKIIFLALFSAFAGTALASDGKFTFTQENEPSPFTGTLFDPEATARLLANNKFLKEEYDLKLGFELSKQEREFNLKLEQLQITLDTQKEKYETTLELKNTEIEQLNKIIAKKPGSNAMIWGIIGGFVAGAASTVAIVHAVNK*

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