NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0105020_1000108

Scaffold Ga0105020_1000108


Overview

Basic Information
Taxon OID3300007514 Open in IMG/M
Scaffold IDGa0105020_1000108 Open in IMG/M
Source Dataset NameMarine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 143m, 2.7-0.2um, replicate a
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterGeorgia Genomics Facility
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)107563
Total Scaffold Genes116 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)95 (81.90%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location
Location NameCariaco Basin, Venezuela
CoordinatesLat. (o)10.5Long. (o)-64.66Alt. (m)Depth (m)143
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010790Metagenome299N
F010921Metagenome / Metatranscriptome297Y
F013943Metagenome267Y
F018015Metagenome / Metatranscriptome237Y
F040845Metagenome / Metatranscriptome161N

Sequences

Protein IDFamilyRBSSequence
Ga0105020_1000108105F040845AGGAMIKLKKLLTEKMSDDKRAFLMLRIYGDSWKINLGKVFSGINKGKPTLIKKGLKEIKILNKKIEEMIEDLI*
Ga0105020_1000108112F010921GAGGMAIKVKGRIKIIEGKAYVHPLTIPELEFLLKIVAEAGHKMEDVPKVLQVTKKLREEYKLVKEHQKT*
Ga0105020_100010873F010790GGAGVIKLKEILEEKVDISDISWNHQKLLKVGGDYIHKARDGRLWYELEDDIKKSKNRTLIKYFKEYDKARLKLQHAGAMLTRAFNMEKR*
Ga0105020_100010876F013943GGAMNIFEQKLWKIINEGSPTGTNSGLGIITGDAWPDGLYTKRGERRYVGPASLTRGMQQVDFPASDNVYGGPDSLNNERRAKRDAGKLYKYLSDPDGHSEIKSDELRDDTPPLSPKQRMYGIHGFHRKQEYTIPPESANFWSTSETLVKPTTPPEGTESGGVPATPEPGSKEMGSASGYRQVNPSGEKVFASNKKLWNKWKDHRLMGAVKGREWKGGKLVDLLPKGVK*
Ga0105020_100010890F018015GAGGMNKKQAFHMNRKWKTFRLDEKLNEENESTWTWIYKGILGGFKKADKKGDASLDAVARGVAFLIKTEFGGGARNDFMKSLKKYIR*
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