NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0105020_1017908

Scaffold Ga0105020_1017908


Overview

Basic Information
Taxon OID3300007514 Open in IMG/M
Scaffold IDGa0105020_1017908 Open in IMG/M
Source Dataset NameMarine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 143m, 2.7-0.2um, replicate a
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterGeorgia Genomics Facility
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6923
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (85.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location
Location NameCariaco Basin, Venezuela
CoordinatesLat. (o)10.5Long. (o)-64.66Alt. (m)Depth (m)143
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007052Metagenome / Metatranscriptome359Y
F042009Metagenome / Metatranscriptome159Y
F083235Metagenome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0105020_101790812F083235N/AMGLIEGIVWFLPWLTEAWLWEKSVNIAIIGTVLFTKPRNWCVDYDSQGYDGVFYCL*
Ga0105020_101790819F042009GAGMICTNCGIIINKGIDISHLWNNPEDTTYACSEKCAEEAPKNWLSDNPTTLYKNKYKQKGNYKSPNFEKG*
Ga0105020_10179088F007052GAGMTKSKFVAKLMKKGKFLSSGTFESLEEARLWAMKEAKLLISDLEMLRSTNVGDIVVEIDKHFTEYEISTDELFKNSVRVI*

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.