NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0105021_1180008

Scaffold Ga0105021_1180008


Overview

Basic Information
Taxon OID3300007515 Open in IMG/M
Scaffold IDGa0105021_1180008 Open in IMG/M
Source Dataset NameMarine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 143m, 2.7-0.2um, replicate b
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterGeorgia Genomics Facility
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1190
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location
Location NameCariaco Basin, Venezuela
CoordinatesLat. (o)10.5Long. (o)-64.66Alt. (m)Depth (m)143
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000615Metagenome / Metatranscriptome984Y
F022974Metagenome / Metatranscriptome212Y
F039176Metagenome164Y

Sequences

Protein IDFamilyRBSSequence
Ga0105021_11800081F000615N/AMCRIRCFYEGFDGKLSWAEIVMSYEDDIAGMIKHWSCGGKRMVTTEHIEIG*
Ga0105021_11800082F022974AGGAMENNETYYIAKLSKKGEHLSSEIHETLDAARLWAMKETKLLVSDTFLRKCKADDIVVEIDEHFFGYEISSEELLKNSERVL*
Ga0105021_11800084F039176GAGMIVSRNSEFGGIDLSLNRSLEELISSYYEAHGAGIELDEDTRPEEIDAYFVLENYLADMGAI*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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