Basic Information | |
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Taxon OID | 3300007516 Open in IMG/M |
Scaffold ID | Ga0105050_10002614 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - FRY-01 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 25535 |
Total Scaffold Genes | 27 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (18.52%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
Associated Families | 1 |
Taxonomy | |
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All Organisms → Viruses → unclassified bacterial viruses → environmental samples → uncultured marine phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater → Freshwater Microbial Communities From Lake Liftoff Mats And Glacier Meltwater In Antarctica |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Fryxell, Antarctica | |||||||
Coordinates | Lat. (o) | -77.605 | Long. (o) | 163.163 | Alt. (m) | Depth (m) | 18 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F002045 | Metagenome / Metatranscriptome | 599 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0105050_1000261422 | F002045 | GGA | MSFFCVYCKIRKKFDKFIKINKIKNKYIIDIKRILEEEEVSFDTDKTFLKILVYNKIQQAIDRNKDIYYIPDFENEFSIEKLLNIKKILGENNFNILIFYNEFRKNPEIIESVFSNLTKFDHSQIIRDY* |
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