NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0105050_10016272

Scaffold Ga0105050_10016272


Overview

Basic Information
Taxon OID3300007516 Open in IMG/M
Scaffold IDGa0105050_10016272 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - FRY-01
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7219
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (40.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater → Freshwater Microbial Communities From Lake Liftoff Mats And Glacier Meltwater In Antarctica

Source Dataset Sampling Location
Location NameLake Fryxell, Antarctica
CoordinatesLat. (o)-77.605Long. (o)163.163Alt. (m)Depth (m)18
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008849Metagenome / Metatranscriptome327Y
F041446Metagenome160Y

Sequences

Protein IDFamilyRBSSequence
Ga0105050_100162722F008849AGAAGGMYKALDEYWIHLHSYDKDEMAYEYALKYYDQNILSNVDSEIVQMWSFRPFETADKDTGIKLNTGTFIDESVYAFSGGKDTWGHGDINHMTVEQNQQWADRVYSVMH*
Ga0105050_100162725F041446GGAMNNRVIKLKVVEDEIINEYELVDAITNTAGGSLEILIDEGPDLSVIKLFGKSFMESLHMLVDNLGIDKKIIKITTYNLVQDRSVWPSIEIQHPVEYFTAAGRFEVPLDKKIQKHFGLFVGTSRWHRLYLSSMMHGLYKDKTILSFWQHHLNNSLPANLRMDDVMLKDANESVREHMINIVKQLPLHLSPDDIKLNLNKGADITRGDWETPYEILPYYNSIFVDIVCETWHEGQCFLPNEKTGRPIIARTPFIAYAGKGFLKNLRKIGFMTFDRWWSEDYDAHEGVQRIQHMLREIKKISGRPVDRLQEIHQEMVPTLQHNYELIKTLTPEVMLDNLS*
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