NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0105055_10002745

Scaffold Ga0105055_10002745


Overview

Basic Information
Taxon OID3300007519 Open in IMG/M
Scaffold IDGa0105055_10002745 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Bonney liftoff mats and glacier meltwater in Antarctica - BON-03
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)27094
Total Scaffold Genes44 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (45.45%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater → Freshwater Microbial Communities From Lake Liftoff Mats And Glacier Meltwater In Antarctica

Source Dataset Sampling Location
Location NameLake Bonney
CoordinatesLat. (o)-77.714Long. (o)162.445Alt. (m)Depth (m)83
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005194Metagenome / Metatranscriptome409N
F009788Metagenome / Metatranscriptome313Y
F087884Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0105055_1000274514F005194N/AMEGIATEHPQINTVLKGNIFDIDLTKSPTGGYLIYDVVSISPNGFNGIDYSLDMFLCDNVTELNTESNEVSVQNECALISLDIMSIFENYNKTSWADKDLHLVLNKNWSIQPFTERFDSLYSGAAINMSLSTSYGYARCKVPVKI*
Ga0105055_1000274517F009788GGTGGMDIITKNTTNYIYCNISNEVVNDYYTMTITSAEYTVNVTLAAPLSVNGRYVSFTLIEGVQDLTNATIALPNNGDYPYEIINATTLSGTTGVVIQRGILRLKQAAEVVYSYTDKQTTFIYE
Ga0105055_1000274527F087884GGAMLYDLTVGQYQLLNEIDEELSMIEQNIYAVSAIKGITYEEASRIKMTEFSKLIEGISEFNIKLLEKLRINNSIVLNGVKYHVEHKPDKLSSGQLLDVLNIRSKNQGKAVEVMDLLLAAMARPKGKEYGDDGLNINERAALIRDAKLSEVWNVFVFFWNLWNNYFNDSEDSLTKWMEETPKKVQEILDNDGDYSA*
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