NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0105054_10233313

Scaffold Ga0105054_10233313


Overview

Basic Information
Taxon OID3300007520 Open in IMG/M
Scaffold IDGa0105054_10233313 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Bonney liftoff mats and glacier meltwater in Antarctica - BON-02 (megahit assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1736
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater → Freshwater Microbial Communities From Lake Liftoff Mats And Glacier Meltwater In Antarctica

Source Dataset Sampling Location
Location NameLake Bonney
CoordinatesLat. (o)-77.714Long. (o)162.445Alt. (m)Depth (m)83
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F087884Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0105054_102333135F087884GGAMLYKLTVGQYQLLNEIDEDLSPMEQNIYAVSAIKGVTYEEASRIKMVDFSKLVEGLSDFNVRLLEKVRINNSITLGGVKYHIENKPDKLSSGQLLDVLNIRSKNQGKAVEVMDLLLAAMCKPKGKHYGDDGIGLNERAALIRDAKLSEVWNVFVFFWNLWNNYFANTEDSLTKWMEETPKKVQEILDNDGHSSQ*
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