NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0099851_1000053

Scaffold Ga0099851_1000053


Overview

Basic Information
Taxon OID3300007538 Open in IMG/M
Scaffold IDGa0099851_1000053 Open in IMG/M
Source Dataset NameFreshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_2 Viral MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)40925
Total Scaffold Genes45 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)33 (73.33%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameChesapeake Bay, USA
CoordinatesLat. (o)37.0516Long. (o)-76.083Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001360Metagenome / Metatranscriptome714Y
F015212Metagenome / Metatranscriptome256Y
F021091Metagenome / Metatranscriptome220Y
F025678Metagenome / Metatranscriptome200Y
F073185Metagenome / Metatranscriptome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0099851_100005312F021091N/AMNDWKNYIDKNGDFQLANFLYKNINELMKHSLDMGTLLSNDSQKLRAYKEQTKKLFKNKWLNIAEVLEYFEIIEKCVCYSEEKEIYCDICKGARYKISSYLSPDEMREVSTFVNAVQDAEVQLKLQKGLMKLLEEI*
Ga0099851_100005323F073185AGGAMSEENTQEQKSEFAIEIKISDKNLSYRSDFPESETIFWLEAVKGLIIKNTFERAGIEQK*
Ga0099851_100005327F025678GAGGMSFDFIESFTVEFPDLTESKYNFSENFNANHGLIIEVAAIHERINSKL*
Ga0099851_100005329F001360AGGAGMSLAKFRKVHAKTGAGRFVVSEGIAPAAYLLPHPGLPTWYLDSEDDRFEIVLTKGTILSVVADSNGDARVVPANGTSGSVTWGDTMSGWDPLDGATPSTTTGSTDTVAVAAYSKPIGCAQYDLYRPFDKGTSQGAGFITHGYVEYPMVDGVNADVAVGSLVRADHMGRPVALSNADAGDYPWLQVGKVIEVEKFATNFDDGLLSYMQLPSDPGALKTVFELTRSGAYSGKLGIRANLDVNNVIGAFRVNLTL*
Ga0099851_100005333F015212AGGAVPIQYPSALDNFVNPTTSDRLDSPTVPHHQQHSDLNDAVEAIQTVLGLNPAGSHLTVKDRIIEAETNILNQSVLNGLTDVTINSVSSGQVLRYNGTAWVNYNEENLVDGGNF*
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