Scaffold Ga0099851_1006772

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0099851_1006772

Scaffold Ga0099851_1006772

Overview

Basic Information
Taxon OID	3300007538 Open in IMG/M
Scaffold ID	Ga0099851_1006772 Open in IMG/M
Source Dataset Name	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_2 Viral MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4784
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (87.50%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	Chesapeake Bay, USA
Coordinates	Lat. (^o)	37.0516	Long. (^o)	-76.083	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F012965	Metagenome / Metatranscriptome	275	Y
F095416	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0099851_10067721	F095416	N/A	QSEQEKKAVEYMNQRTVESFMNRKPLFRDPETASQLEAEMAPVVQALTSTGRYSSTDEILETAYNYVVNGNPTFSGIAQRLQTTPVIQQQQVATEKAKKAAKSISGSAGSGTPRIVTKDIRDNLRRRLSGD*
Ga0099851_10067727	F012965	AGG	MTLSTIINNVADEAGYTVESNILTSTEPTTKQLLAIANRMNREIFEAYPWPKCFASGSITLAAGTATYALPAAFSWYHYETFWNQSTRWRVLGPMSAQEYAEIRGFGLNTTVYQRFQIRGISNNQLMISPTPGANYNGDIIIFEYIADRSVRPKVWTTATTFAADSYCFYNGNYYQTTAGGTTGATAPTHTSGSVSDGGVTWTYYDGIYDRFLAETDVSLFNEKLVEQGVLERFAEIHGLQSIRPRFDQQLHEEFSRDQVGKTVYAGGTVRYNMFARDGVAVFGTWI*

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