NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0099851_1007320

Scaffold Ga0099851_1007320


Overview

Basic Information
Taxon OID3300007538 Open in IMG/M
Scaffold IDGa0099851_1007320 Open in IMG/M
Source Dataset NameFreshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_2 Viral MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4583
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (15.38%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameChesapeake Bay, USA
CoordinatesLat. (o)37.0516Long. (o)-76.083Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005010Metagenome415Y
F008384Metagenome334Y
F013231Metagenome / Metatranscriptome273Y
F092935Metagenome / Metatranscriptome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0099851_100732012F005010N/AMIKSYFRKRKHIREVQKYLDMLMIDNVNLSIHASRFGWTPELQNQLTNSALLIRKYQRRLRLIKM*
Ga0099851_10073203F008384N/ALKKNIRYNKEAIEREAILSANQGRITEPLGAFIYQRAVEVAGSAFITNGDEELKQALVDEAIMRVCEKFLYYYVEGKSAANLIITMIYSTMTNKIVGLKWKDVYGQRIKGKIICIENGEKHTRLIKYIKDDNISEKL*
Ga0099851_10073205F013231N/AMETNNEKNYYTCKLIKNKIDTYLYEMARLFTNIGIDSTVEEIQEAYRKEKEYIERIAELDPDKANNLRASY*
Ga0099851_10073209F092935N/AMETKDLPTHSLILERKKAFANLVRAYLKFNVSDALNIVVEKDANISINGNYYKFDVSDYTGCTENYIFFNPSSGRLLIQKDAVKKIYKLEVDLLDN*
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