NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0099849_1000015

Scaffold Ga0099849_1000015


Overview

Basic Information
Taxon OID3300007539 Open in IMG/M
Scaffold IDGa0099849_1000015 Open in IMG/M
Source Dataset NameFreshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)62709
Total Scaffold Genes97 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)30 (30.93%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Chesapeake Bay
CoordinatesLat. (o)38.9819Long. (o)-76.3716Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029710Metagenome / Metatranscriptome187Y
F059455Metagenome134Y
F086827Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0099849_100001526F029710GGAGMKNKNAKLGEEGWYSWLTIRQEDDTDDWSAPIMWLDDMSEDNLFPSDDLNIDWVEEMDKEGAPIIDGDHLGRDICIEVTCPSKNIDKRRAVGYNIDFNWN*
Ga0099849_100001528F086827GGAMNTCLELEQKYKDKILSLFLDHVKKVEADHDVKTDGDNTDYWNALKLDDGSFVDYNFHMMSEWDDLDRSWTCEVYPVDPPTENNKYHSINTNYTLLLAFYHPEENKLDVEK*
Ga0099849_10000153F059455GGAMKVISKEIIGTTEWSEGRTKKELVKQTAWSSSKDWSGLSGLEINGYTFNNYVKCTAITSQGLSRNKYFTIPIDKVEEFCHNLMEAKDFVERHKNDKV*
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