Scaffold Ga0099847

Basic Information
Taxon OID	3300007540 Open in IMG/M
Scaffold ID	Ga0099847_1000227 Open in IMG/M
Source Dataset Name	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300007540 Open in IMG/M

Scaffold ID

Ga0099847_1000227 Open in IMG/M

Source Dataset Name

Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	19040
Total Scaffold Genes	21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	16 (76.19%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

19040

Total Scaffold Genes

21 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

16 (76.19%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Chesapeake Bay
Coordinates	Lat. (^o)	37.1	Long. (^o)	-76.0972	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Chesapeake Bay

Coordinates

Lat. (^o)

37.1

Long. (^o)

-76.0972

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F000857	Metagenome / Metatranscriptome	858	Y
F001059	Metagenome / Metatranscriptome	790	Y
F001915	Metagenome / Metatranscriptome	617	Y
F003521	Metagenome / Metatranscriptome	481	Y
F004695	Metagenome	427	Y
F006264	Metagenome / Metatranscriptome	377	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0099847_100022711	F006264	N/A	MIEDYTAIFRQKLSGQAEVCARKTLEWLQKDLQGERNLDPTEIFYLASAAQLMLNIRDTYGKE*
Ga0099847_100022712	F001059	AGGA	MATYDIAALKEDLPNARDLAQFVYDKVGISLDLVGKSKEDQYGVAKNALEGKKFPQEFVTEENPYVDKKDLIPVDEIRKLPERSKDLPDPSAQVHFFGATNMPHPLDPQSDRKVGISFKKYENGMITFQIMGPLEQQAVGARINKYGQSVPEKYTWIDPRTEELVMRRPDGTYTEKGRGLHTYCIGEKGGGIWSLIDRDMVTVTQKNIANPWA*
Ga0099847_100022717	F001915	AGGA	MEWQLAHPLYDVEDIVAMAKDHFEGEVDQILRTDPQVMRKNVTMTATYQLFDKNREFLAVCRGEPLLIEGNHIQGELLGYCWYDRGGYTTYSIDEITNAKFHHVDLKLSPRLRVKLINQMIDQHILWANSCGIPVICSTSIRSDHDGFMKIHKKRGFQINGSYAWLKTKDGMDRMNNV*
Ga0099847_10002275	F000857	N/A	MEKSMELNLNNEEAKVNEDYYTKGNLSGGLESLLIKNDKMYNEVKSGTWSQTFRTPNMDYKVGAQDGVRFVQYEQKNVEAVKQSCKEMREFYKEHGTDNPFFAGTFHAMNLPKCFAHEISSKWFNNRPWELIKKDKQDKILFYAIVNEHYSDFVCHPSGKIPLPYNPTVPTK*
Ga0099847_10002278	F003521	AGGA	MKSLVLKIRYFFNRRVKVTDARKEADVSRRTLVIENGECAYRLLANEDFALMFNLYRFGILERLEDSTDDLDRISNAHYVAGVRDFISFIEKQEYLGKVAKKVIT*
Ga0099847_10002279	F004695	AGGA	MLDKQNIIVPYIEAPPGNKGIVFQVAHEVYLKMVDYLRLTQAKNTFNRLSDYHYLNIAVSNSTEPIRGLDYIHPVVNPGVDYATAVITKCLMPNGKVNFEFERFSEMDSAQANQATDMVKYMLNSKNNSYQIIRDWAQDSLLHKNGIVMVSPVREPVTQYKEVEGTKDQLRVFETLAAEKGLTAKRQGMEKIDVDLEMAMQSIAPNENGEIDVNSALNQNTVYRAKYKLTGYSTTVRVKHVAQHYFVCNPTISTIQDQDFVGFYEPMTIHECKAQYPYVDLEKLADHAAYGPAGAYQAGALENDLALHARDSTPVPGQGVIASAGADRYSRVIMLTTAWIRKDVDGDGEEEIVEVCYSGSYVLYVKEVDFIPLAAMCPKPIVGNFFGYSLAERLIPMQEYATSIARAEISFAMQASTPRIGVNPEFIDAEEIQRGVSAMFILDRKFDPQKHIFQFQPMQGNLAYVQSAMQRFEADKMAMIGMTSPSDVLNPEVMKDGNSGYKLQMAMGPNQLIQDEMVKNCAIGLRDVIYIIWKTLIQYSDDYNIQQLANVCGKGQPFMDAKSMENFEFIDRQIINIDLALGFLSEENRLTRQQLITQTQAAFSAAMMQIDPSVPELFAKLRRPYEDTLKVLGVKDVDAYLPTMEEASKMAQNKAQQGPGLAEQELSSKVAMNTAKVKDTEANTAFTVRKTQDLDTDDMFEALAAKRDKLKAVQID*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0099847_1000227

Overview

Ecosystem & Geography

Associated Families

Sequences