Scaffold Ga0099847_1011841

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0099847_1011841

Scaffold Ga0099847_1011841

Overview

Basic Information
Taxon OID	3300007540 Open in IMG/M
Scaffold ID	Ga0099847_1011841 Open in IMG/M
Source Dataset Name	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2879
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Chesapeake Bay
Coordinates	Lat. (^o)	37.1	Long. (^o)	-76.0972	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F016393	Metagenome	247	N
F040631	Metagenome	161	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0099847_10118413	F016393	GAG	MARGQINSVLGMTEGKFRTMIKSALRPCWRNSSRKTFIQSVRQRGINPATGRERFVVVCVDCGKEMGMSEKERRTKIDGTLEKRAKSVYEIDHVDGITPFTDVQTLETLTPHFRDMIYGKQEVVCVACHKVRTANQRKKKSS*
Ga0099847_10118416	F040631	N/A	MNDKALTKYRQVTGACARFIERHQDKELLEEEAQTLINDNKASRSESDWQAIKDFQDECCRTVYKCTKKGLIEPAT

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