NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0099848_1025683

Scaffold Ga0099848_1025683


Overview

Basic Information
Taxon OID3300007541 Open in IMG/M
Scaffold IDGa0099848_1025683 Open in IMG/M
Source Dataset NameFreshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2482
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Chesapeake Bay
CoordinatesLat. (o)38.9819Long. (o)-76.3716Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009954Metagenome / Metatranscriptome310Y
F016152Metagenome / Metatranscriptome249Y
F064417Metagenome / Metatranscriptome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0099848_10256836F009954AGGMDGLSIKVKTNDGQEGTYSLRPKTIVAFEQKFNKGFAKLLSEDQKLEHIYFLAWGAMKDAGKVVKPFGEAFLDTLDAVELIADPNSESTETA*
Ga0099848_10256837F016152N/AMVSVETGISPSDLLEAPDGVLEAIVIYLKERSKNASRQ*
Ga0099848_10256838F064417GAGMSTDAIVLTGVKPTINALKEFDKQAVKEFNKVINSELRSAKKDAQGFVKSTAPLSGWSTQPARNPRTRGGAGWPAWDQSIIRAGITSSKAE
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