NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0099846_1072312

Scaffold Ga0099846_1072312


Overview

Basic Information
Taxon OID3300007542 Open in IMG/M
Scaffold IDGa0099846_1072312 Open in IMG/M
Source Dataset NameFreshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1288
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Chesapeake Bay
CoordinatesLat. (o)38.8455Long. (o)-76.4191Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002738Metagenome / Metatranscriptome533Y
F006619Metagenome / Metatranscriptome368Y
F038646Metagenome165Y

Sequences

Protein IDFamilyRBSSequence
Ga0099846_10723121F006619N/ANLSTFQEEIQGFRPWCIHLTWFNKYRELLCKRTEVRNSSPSGTPEKCVAWWYAPPSDHVSDGRFVLLHTKSGAQAPLTHWRTYKPKEVFTQSHAWDLFFNMMEAGYTPFPGTSLPQLKNAFKK*
Ga0099846_10723122F038646N/AMTDEILDYARQLVTDQLMKPREKFNYNLEIPKDIHWEMVRLGAELQMDYEVYAEEVLKAHVEDQISRRIVAKAYSDPSWVNKLKLDCIDEPDGTMTIHIEWDEKDPDLLYWTSLGPKGQENFILTALRSACESVLPDHDN*
Ga0099846_10723123F002738N/AMTIDTYGLTTDQYEEFFDKNIRLATKLYLRANSIVVEEGAAHADFKTLLDLYQEAVYATNDDCRRYQKSNNPEALKEATADIFGITPTREELMAEVQSVNAKVEALTDYVAKLVEITTNGLNGVVETLEG*
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