Scaffold Ga0102861

Basic Information
Taxon OID	3300007544 Open in IMG/M
Scaffold ID	Ga0102861_1000040 Open in IMG/M
Source Dataset Name	Estuarine microbial communities from the Columbia River estuary - metaG 1449B-3
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300007544 Open in IMG/M

Scaffold ID

Ga0102861_1000040 Open in IMG/M

Source Dataset Name

Estuarine microbial communities from the Columbia River estuary - metaG 1449B-3

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	37422
Total Scaffold Genes	76 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	27 (35.53%)
Novel Protein Genes	11 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (18.18%)
Associated Families	11

Scaffold Components

Scaffold Length (bps)

37422

Total Scaffold Genes

76 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

27 (35.53%)

Novel Protein Genes

11 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (18.18%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Eukaryota	(Source: Euk_MAG)

Taxonomy

All Organisms → cellular organisms → Eukaryota

(Source: Euk_MAG)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location Name	Columbia River Estuary, USA
Coordinates	Lat. (^o)	46.2327	Long. (^o)	-123.9168	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Columbia River Estuary, USA

Coordinates

Lat. (^o)

46.2327

Long. (^o)

-123.9168

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001018	Metagenome / Metatranscriptome	804	Y
F001165	Metagenome / Metatranscriptome	760	Y
F001807	Metagenome / Metatranscriptome	631	Y
F002333	Metagenome	569	Y
F002876	Metagenome / Metatranscriptome	524	Y
F003601	Metagenome / Metatranscriptome	477	Y
F013517	Metagenome / Metatranscriptome	270	Y
F022857	Metagenome	212	Y
F040073	Metagenome	162	Y
F067649	Metagenome	125	Y
F073444	Metagenome / Metatranscriptome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0102861_100004010	F003601	AGG	MTEYTDDQLLAQALSNLGEYIHTHGTPDYVLVDSEDPRNEDDYDTWSYGTEPLPHDHTWQHASIDVSISPSEPE*
Ga0102861_10000402	F001165	N/A	MSDSLRIPDSIDTQRLQAMQLVAKMKESADKHGIGFIGGFISPDGQKFIMTNMDDDDTQALLPDNLK*
Ga0102861_100004032	F040073	N/A	MLKFESSAEDLFWQEKMFRTINDCTSLSELKEIAVLLTKIATTRQMAIKGLVNDALNLMHENYSSKAKDITDSLS*
Ga0102861_100004034	F002333	N/A	MQLQTELNSAQALIYSRSNIGRAYAGFDDTEISGIYLRDDNCIVVRRDGDEQAYDRTLIKTAFQQYTHRLKDFFSYLGPNYRGPSVWHNNAYVMFKGWNYSHALGHLTSNAKLQQHWADKFIHLSDPGKVVALLQNDQTDLGHLVAPDGLRSPTRPIDLESELEENASGVQASTPEPYCSCGSFQRQLLDVSLFQQEIEGFKPWCIHLTWFHKYRELLCKRTEVRNALLSGTPDKCVAWWYAPPVDHLSDGKFVLLHTKSGAQAPLTHWRTYKPKEVFNQTHAWDLFFNMMEAGYVPFPGTALPQLQSAIKKK*
Ga0102861_100004038	F013517	N/A	MFESLFTAVLPVMKDILWAAAGMLLSYAINKFQSNFN*
Ga0102861_100004039	F001018	N/A	MTQITQVKLKDLNILKLYEHYGALERSIPLLTPESQELAQAELEACASLRSEKVDRIYYAMAAHEDALERIKKEGDLITQAKRHHESQLRSLKGLLSWLRRSLPLDSNKISGRNYQFTLTRKKDLTVEITSDPEFWHTEERADYCIEEEITTTKRVVLRSMSGEVLDERTEPKTTTKIVPNLDAIRTAHQTGRQLPSGVKVIQEYSVRSKRIYAEPRVELEASEYPGHLLPED*
Ga0102861_100004040	F073444	N/A	MNCHQHAVKDFDLQLEMNNLELDMIKDGEEVLPYNISKFEELEQKKLKLLVGKRFHQNAANAYWFHLAKCGK*
Ga0102861_100004042	F022857	N/A	MDPVYVPKLTVSFAVDLEVEYDSFGGRTPQDIAIALQDELDNLLFETSPSVKGVFTSITAIDSND*
Ga0102861_100004063	F067649	N/A	VEIPIFMGEWINTLQSRMTNAMDGDCFLLPTYMHLHAFTILKDGMFAERDFKVELQNTKEAQ*
Ga0102861_10000407	F001807	AGG	MNVLAIEHTVIDGNDVTVTAVVDDMRLIHRSTYLDPEEYAPALCRASFELDEGEQIPLDEDGFCSYLTDLNPNWELLPVDND*
Ga0102861_100004074	F002876	N/A	MTCKKSELVSAINSFSSARVTGDGNLIAFAGNLVGQLLETIEFEPEEPVETTETEVVE*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0102861_1000040

Overview

Ecosystem & Geography

Associated Families

Sequences