Scaffold Ga0102861

Basic Information
Taxon OID	3300007544 Open in IMG/M
Scaffold ID	Ga0102861_1000102 Open in IMG/M
Source Dataset Name	Estuarine microbial communities from the Columbia River estuary - metaG 1449B-3
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300007544 Open in IMG/M

Scaffold ID

Ga0102861_1000102 Open in IMG/M

Source Dataset Name

Estuarine microbial communities from the Columbia River estuary - metaG 1449B-3

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	22329
Total Scaffold Genes	43 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (30.23%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (33.33%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

22329

Total Scaffold Genes

43 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

13 (30.23%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (33.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location Name	Columbia River Estuary, USA
Coordinates	Lat. (^o)	46.2327	Long. (^o)	-123.9168	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Columbia River Estuary, USA

Coordinates

Lat. (^o)

46.2327

Long. (^o)

-123.9168

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F007260	Metagenome / Metatranscriptome	354	N
F010835	Metagenome / Metatranscriptome	298	N
F013412	Metagenome / Metatranscriptome	271	N
F013879	Metagenome / Metatranscriptome	267	N
F017997	Metagenome / Metatranscriptome	237	Y
F023575	Metagenome / Metatranscriptome	209	Y
F039136	Metagenome	164	N
F058715	Metagenome	134	N
F059002	Metagenome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0102861_100010211	F007260	N/A	MSVLQSAMGNPSFLWQGVLVRCLPAAITDANSVISGGFQDNVQARVLVKFSDWRLADSTLVTVDAAVWSCDVGSTADRLLQESGSLLLQENTDRLLLTFGKMIPVVGRLLTYDGRQMRIMSAKRDGSGAYYALELGSKTK*
Ga0102861_100010212	F013879	N/A	MTPTVTVDTSRFDEAWKEYLPKTKRSLADAVNARTFYLMLRLYCLLPPKSPQAARNKILDYFNRPVGADRYDKKTGKRVGKSRQLRVVHLIAQAKNAKAGKPGLYGQDMRDAAGKLRRRAAGSVGYLKSCVTKAIKKLSPSFQQFGGTRRAKKGSAGVKSVAGNAALISLANQYGLPQENVAMHKGSSANTQKARSGINPSSQVRMNIGLADNQVGTVEGIYAKAMQQAYNDEARELENHIAAALQAAFDGSESKGITVT*
Ga0102861_100010213	F010835	AGGA	MNAVALRTERALVDWLAAEDWSESPIGTPTCLTSYGHGAFADPDLEDQMPSFPRIVVRASTAVPVHPLDRTCEIDITATLQLSADDTSEAQALAVVQIFENLLQYLYVDGNIAELDALDTDPSGGFNAQFAVPVDFGINDISERARTFSRSMTIFAAANTI*
Ga0102861_100010214	F023575	N/A	MAQSKGLALVYGSKGTIQLFNQTGVSPGTALSGAISTIESYDVTHEADVEQIKNSAGDVIAQIAANERISLSVTFIPSSATSAAIALTGASLPNVNGYAAIAGADATTYGGVSINGNYVYSGGGSVKFTSSGKAMVTVNLTKYPSMAGDATVYTL*
Ga0102861_100010225	F013412	GGAGG	MRHLWARGFGRLHSDAEIITTDDGKQFLIAVIEFEKRTLGNGKLYAQRVTFRSFDHEDMDAVNLLIEGTHIMFDGDCDAVADKSSTGWWYANPRITGRISEIIPSGHES*
Ga0102861_100010228	F039136	N/A	MTIEIKYTASVFTPAGWRGVTIKATATKTSEKMAVVVEVLEINGDSPKSKMSRTGASRQRYNGNSISCREVGAKKRLSACEILN*
Ga0102861_100010240	F058715	GGAGG	VSLLEKLGLSKESMERMLGAVAPLKKTKIKRYRRYETVPADIRKAILGEHQSYTCRELAKKYGISASTIWDIRDSKSKTE*
Ga0102861_100010242	F059002	N/A	MNILNEIKSGISRLLGVHKTLETKEAPRTLKPKRIQKRGRGRPKGLKIPQQIVDAVRQADKSMTNKQLAAKYRVSYFWVWSVRSNKLRLN*
Ga0102861_10001029	F017997	N/A	VNFIEQIVTALLKWLTSFVQKPPTVEDAKRDPDLKKKLLDRIAESDR*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0102861_1000102

Overview

Ecosystem & Geography

Associated Families

Sequences