Scaffold Ga0102861_1000184

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0102861_1000184

Scaffold Ga0102861_1000184

Overview

Basic Information
Taxon OID	3300007544 Open in IMG/M
Scaffold ID	Ga0102861_1000184 Open in IMG/M
Source Dataset Name	Estuarine microbial communities from the Columbia River estuary - metaG 1449B-3
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	16405
Total Scaffold Genes	24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae → unclassified Siphoviridae → Synechococcus phage S-CBS4	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location Name	Columbia River Estuary, USA
Coordinates	Lat. (^o)	46.2327	Long. (^o)	-123.9168	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F021068	Metagenome / Metatranscriptome	220	Y
F034858	Metagenome	173	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0102861_100018410	F021068	GAGG	MQPSDCTIYAVCIPGERVRYEAQSCIVPIMGGAHALIDEEREDLRSQGYVFDDENAFLSQLNNRWGELSCVSWIILNAKQNNIGNAQYRRNWLEPKDQWYDSSTLYFPEPALFNCTLEQQFYGGHFDFDAPAMTRDIADSGRWIFSRKEIDCIWSQNSFIGCNMARGSSADYKQFMSALLAALEPIWKKHKEQFLCIEGYDKRALAFIAERLITGMVLYREKLFPSMNIATAPIGFVP*
Ga0102861_10001847	F034858	AGG	MALPEGSIRFCISTCKKFAPHTIPVIIPSLLAAGIEPEEILIVNGGQTAHTLTDCEGVPMLLTQQNSFEYTPLIEIVEQSMESEYWFLLHDTCIAGAAFKQLAYEPPAEAPEKVAMKCTPSMSIGLYRHDYLMQHRERLMAIKNMDSSPEALQQWKQWGVPNEDYMLWKLQDAHCHIYHLDRHGPDEWNYQGHADSYGTGSQRRIEYFPQLDLAKAKSNWQGVQPHLCIDI*

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