NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0102861_1000555

Scaffold Ga0102861_1000555


Overview

Basic Information
Taxon OID3300007544 Open in IMG/M
Scaffold IDGa0102861_1000555 Open in IMG/M
Source Dataset NameEstuarine microbial communities from the Columbia River estuary - metaG 1449B-3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8081
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)23 (88.46%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameColumbia River Estuary, USA
CoordinatesLat. (o)46.2327Long. (o)-123.9168Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019438Metagenome229Y
F057982Metagenome135N
F064409Metagenome128N
F079703Metagenome / Metatranscriptome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0102861_100055512F079703GGAGMIDPNKLQYFTMAAWLRGYADSLNEHEQRTLVNKLKKAAGMLDDVWSKYVEKQEVDE*
Ga0102861_100055516F064409AGGAGGMKLFKLKGISKKYALRAAQYRRVARGQAVAGLAFTENALRELHDWESRGIGSVDKSRNGFAYGKWCVDLSVSMWVEDLMKGDFCKAEFLETRLQKLHNAKKLEAVIANPFFPHAIALEERA*
Ga0102861_100055517F057982GGAGGMRYRITYSNGNYSDWDAMQKELAWAYRWGVFLYAIRLNIGAWRAGHKSFKYWLYVLRRKPKITKEEA*
Ga0102861_100055518F019438AGGAGMETIATTILLGFIGVVVAGLVLVALMRLWFWMDEEDRRDR*
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Institute for Fundamental Biomedical Research
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