Scaffold Ga0102861_1006269

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0102861_1006269

Scaffold Ga0102861_1006269

Overview

Basic Information
Taxon OID	3300007544 Open in IMG/M
Scaffold ID	Ga0102861_1006269 Open in IMG/M
Source Dataset Name	Estuarine microbial communities from the Columbia River estuary - metaG 1449B-3
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2757
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location Name	Columbia River Estuary, USA
Coordinates	Lat. (^o)	46.2327	Long. (^o)	-123.9168	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F009070	Metagenome	323	Y
F015102	Metagenome / Metatranscriptome	257	Y
F027536	Metagenome	194	Y
F029123	Metagenome	189	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0102861_10062691	F009070	AGGAG	MRLAIVIDVDGDIMYVPEGAVFENYPKPRLFDNLKDAQEECAKWNTGIIVDFDNNNKTVPIVRGFDDEERRRSMEREEINKDDGTSTDKDSTR*
Ga0102861_10062694	F015102	N/A	MQVESEDGENPNTPFDDVTHWVGNLPTKDTDSDERTNKRNTRGKTKSNFLRKKLGLEKK*
Ga0102861_10062696	F027536	AGGAGG	MRVSKVVPIDRVLNECRRRADDAWWDGKDDEAKLHEQEVKLYEQDKQEGILWVPNF*
Ga0102861_10062697	F029123	N/A	KWFGYHSFKHRMDAVRYELRYLNVFKDLTVEIRRREHESQ*

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