NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0102861_1015703

Scaffold Ga0102861_1015703


Overview

Basic Information
Taxon OID3300007544 Open in IMG/M
Scaffold IDGa0102861_1015703 Open in IMG/M
Source Dataset NameEstuarine microbial communities from the Columbia River estuary - metaG 1449B-3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1850
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameColumbia River Estuary, USA
CoordinatesLat. (o)46.2327Long. (o)-123.9168Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005775Metagenome390N
F008615Metagenome / Metatranscriptome330N
F016114Metagenome / Metatranscriptome249Y
F026828Metagenome196Y
F036110Metagenome / Metatranscriptome170N

Sequences

Protein IDFamilyRBSSequence
Ga0102861_10157031F026828N/AQSLMTEELIGNAIAFLAGWILKRPDFVQKILSKLFAKKDK*
Ga0102861_10157032F036110N/AMEILLFAATVAVSLVGFLLSRELNRTSEELKLLRQDVFRLSVDLAKLQTRLDDII*
Ga0102861_10157033F008615N/AMNTPNTFGAKMFGRFMRKGWHISFTDSYQDRVCVIPPERLDAKHLFGIYIPVMRHTWQPDLKREWWAALQDKNTMHGPTFEASAHPDDIERFAAFAAWIGDLLRNPEKFT*
Ga0102861_10157034F016114N/AMVNKYWNAAFFDSRDVETINDMAAMARRMLISQRELQRDELLRLKMKYPHLTTKD*
Ga0102861_10157035F005775AGGAMAKQRPRYTKAQHQIVTPAFVEKKIQLHKSIKWTTKDDRDLFIMVSGSVTRYVPKSEHNSQAPMGFFNLQMGHYNKISIHTRDFAQLAEVFEQITLFLKNNSGKLDQVVTKELDTYTTHHLKNLLNTNEPR*
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