Scaffold Ga0102861_1021024

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0102861_1021024

Scaffold Ga0102861_1021024

Overview

Basic Information
Taxon OID	3300007544 Open in IMG/M
Scaffold ID	Ga0102861_1021024 Open in IMG/M
Source Dataset Name	Estuarine microbial communities from the Columbia River estuary - metaG 1449B-3
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1620
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location Name	Columbia River Estuary, USA
Coordinates	Lat. (^o)	46.2327	Long. (^o)	-123.9168	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002764	Metagenome	531	Y
F011742	Metagenome	287	N
F020138	Metagenome	225	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0102861_10210244	F020138	AGG	MNQQQTNRLNAFWQDVEAHKAVNPSSPESALVILKSVALDALLAAQDIEQIADRSE*
Ga0102861_10210245	F011742	AGGAG	MMQTIEFVPFDWVDDDFNPEIDRIEVDYEWHEADDSVGLIAYCEKTVKWMRFNLQIKDITDELSYADLAYLKHEIKRNDQEIADERT*
Ga0102861_10210246	F002764	AGGAG	MKEPEDEAFDELSRRQGDWGLQGSRKHQIIQYAENNARNEVIEEVAQHIEKCTLAFGKDTIQSFTAYVRGMKK*

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