NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0102877_1229107

Scaffold Ga0102877_1229107


Overview

Basic Information
Taxon OID3300007548 Open in IMG/M
Scaffold IDGa0102877_1229107 Open in IMG/M
Source Dataset NameEstuarine microbial communities from the Columbia River estuary - metaG 1548B-3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)523
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameColumbia River Estuary, USA
CoordinatesLat. (o)46.2319Long. (o)-123.8812Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018718Metagenome / Metatranscriptome233Y
F047046Metagenome / Metatranscriptome150Y

Sequences

Protein IDFamilyRBSSequence
Ga0102877_12291071F047046N/AVVKIKIKNMNIFSIIKPKTQRDDLKSVIGKDVSENRSPTLRAKLIKVNKATCLFEVVQSPYRSGDESRIGERYRVPNAWAWNAFFF*
Ga0102877_12291072F018718N/AVNIREFYVKNYPTDELGLELNETPTFAGLLNQLIVGGDVYRYIGVGDSIIRERLFERLAEELEVSYDYVYNLWLK*

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