NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0102820_1008644

Scaffold Ga0102820_1008644


Overview

Basic Information
Taxon OID3300007554 Open in IMG/M
Scaffold IDGa0102820_1008644 Open in IMG/M
Source Dataset NameEstuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.709
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2616
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: Euk_MAG)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameColumbia River Estuary, USA
CoordinatesLat. (o)46.2Long. (o)-123.94Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F061548Metagenome131Y
F068463Metagenome124N

Sequences

Protein IDFamilyRBSSequence
Ga0102820_10086441F068463GGAMARRRDREALDALIAAGATPSKLVGSEGISLVQGKRRVRLVSDDGTPTKQGRYWEQKTGERLPTGGFMQQAAVREGGSETIRLRDGSKGVTRRWNEARGDWDFTRLGTSYYKALRRNYVVSVPVKVQGKRRDGSSYEYRAHIFVEKSGLTSKELPLRLRSPERDE
Ga0102820_10086442F061548N/AMAYSALALANVSITAKGAKMAMLTNGAERCNCTFAEPTHCPFGPSNFDKDPAATRQNLDIRVSGAAAEFFDGLDAWAIDYICAHSERLFKKSLSLAQVKDMYHPCLRKAPGYDPLLRTKYNTPGNRGACRFWTAGGEEREAPVDWREAEVTPHVHVSHLWMMGGSCGLVVNVCDLLVTEARRAFPFARMECDE*
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